diff --git a/compile.sh b/compile.sh index e620407..5856733 100755 --- a/compile.sh +++ b/compile.sh @@ -1,4 +1,4 @@ -python3 gentopic.py +#python3 gentopic.py lualatex --shell-escape slides biber slides lualatex --shell-escape slides diff --git a/gentopic.py b/gentopic.py index 9aa3f60..73f2ad2 100644 --- a/gentopic.py +++ b/gentopic.py @@ -1,3 +1,6 @@ +print("really?") +exit() + import os import json diff --git a/slides.blg b/slides.blg index dea1d9a..674eb32 100644 --- a/slides.blg +++ b/slides.blg @@ -1,9 +1,9 @@ [0] Config.pm:311> INFO - This is Biber 2.16 [0] Config.pm:314> INFO - Logfile is 'slides.blg' -[51] biber:340> INFO - === Fr Apr 1, 2022, 13:45:40 -[61] Biber.pm:415> INFO - Reading 'slides.bcf' -[111] Biber.pm:952> INFO - Found 0 citekeys in bib section 0 -[116] Utils.pm:395> WARN - The file 'slides.bcf' does not contain any citations! -[122] bbl.pm:654> INFO - Writing 'slides.bbl' with encoding 'UTF-8' -[122] bbl.pm:757> INFO - Output to slides.bbl -[122] Biber.pm:128> INFO - WARNINGS: 1 +[52] biber:340> INFO - === Mo Apr 4, 2022, 10:53:33 +[64] Biber.pm:415> INFO - Reading 'slides.bcf' +[115] Biber.pm:952> INFO - Found 0 citekeys in bib section 0 +[119] Utils.pm:395> WARN - The file 'slides.bcf' does not contain any citations! +[125] bbl.pm:654> INFO - Writing 'slides.bbl' with encoding 'UTF-8' +[126] bbl.pm:757> INFO - Output to slides.bbl +[126] Biber.pm:128> INFO - WARNINGS: 1 diff --git a/slides.log b/slides.log index c6b2bad..5c608f8 100644 --- a/slides.log +++ b/slides.log @@ -1,4 +1,4 @@ -This is LuaHBTeX, Version 1.13.2 (TeX Live 2021/Arch Linux) (format=lualatex 2022.2.18) 1 APR 2022 13:45 +This is LuaHBTeX, Version 1.13.2 (TeX Live 2021/Arch Linux) (format=lualatex 2022.2.18) 4 APR 2022 10:53 system commands enabled. **slides (./slides.tex @@ -1986,12 +1986,12 @@ Package polyglossia Info: Option: English, variant=american. Package polyglossia Info: Option: english variant=american (with additional pat terns). Module polyglossia Info: Language data for usenglishmax +(polyglossia) loader loadhyph-en-us.tex +(polyglossia) patterns hyph-en-us.pat.txt +(polyglossia) hyphenation hyph-en-us.hyp.txt (polyglossia) righthyphenmin 3 (polyglossia) lefthyphenmin 2 -(polyglossia) patterns hyph-en-us.pat.txt -(polyglossia) synonyms -(polyglossia) hyphenation hyph-en-us.hyp.txt -(polyglossia) loader loadhyph-en-us.tex on input line 35 +(polyglossia) synonyms on input line 35 Module polyglossia Info: Language usenglishmax was not yet loaded; created with id 2 on input line 35 Package polyglossia Info: Option: english variant=american (with additional pat @@ -2053,12 +2053,12 @@ braces): > {german/localnumeral} => {polyglossia@C@localnumeral} > {german/Localnumeral} => {polyglossia@C@localnumeral}. Module polyglossia Info: Language data for german +(polyglossia) loader loadhyph-de-1901.tex +(polyglossia) patterns hyph-de-1901.pat.txt +(polyglossia) hyphenation (polyglossia) righthyphenmin 2 (polyglossia) lefthyphenmin 2 -(polyglossia) patterns hyph-de-1901.pat.txt -(polyglossia) synonyms -(polyglossia) hyphenation -(polyglossia) loader loadhyph-de-1901.tex on input line 10 +(polyglossia) synonyms on input line 10 Module polyglossia Info: Language german was not yet loaded; created with id 3 o n input line 10 Package polyglossia Info: Option: German, spelling=new. @@ -3026,12 +3026,12 @@ Package biblatex Info: ... file 'german.lbx' found. (/usr/share/texmf-dist/tex/latex/biblatex/lbx/german.lbx File: german.lbx 2020/12/31 v3.16 biblatex localization (PK/MW) Module polyglossia Info: Language data for ngerman +(polyglossia) loader loadhyph-de-1996.tex +(polyglossia) patterns hyph-de-1996.pat.txt +(polyglossia) hyphenation (polyglossia) righthyphenmin 2 (polyglossia) lefthyphenmin 2 -(polyglossia) patterns hyph-de-1996.pat.txt -(polyglossia) synonyms -(polyglossia) hyphenation -(polyglossia) loader loadhyph-de-1996.tex on input line 561 +(polyglossia) synonyms on input line 561 Module polyglossia Info: Language ngerman was not yet loaded; created with id 5 on input line 561 ) @@ -3351,32 +3351,27 @@ Package luatex.def Info: illustrations/tud_logo_cmyk-eps-converted-to.pdf used [7 <./illustrations/book.png>] (./topics/chiara.tex -LaTeX Font Info: Font shape `TU/LibertinusSans(0)/b/n' will be -(Font) scaled to size 10.95pt on input line 28. LaTeX Font Info: Font shape `TU/LibertinusSans(0)/m/n' will be -(Font) scaled to size 12.0pt on input line 28. +(Font) scaled to size 12.0pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusSans(0)/b/n' will be -(Font) scaled to size 12.0pt on input line 28. - -File: illustrations/chiara.png Graphic file (type png) - -Package luatex.def Info: illustrations/chiara.png used on input line 28. -(luatex.def) Requested size: 109.47633pt x 85.35826pt. +(Font) scaled to size 12.0pt on input line 38. +LaTeX Font Info: Font shape `TU/LibertinusSans(0)/b/n' will be +(Font) scaled to size 8.0pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusMath-Regular.otf(2)/m/n' will be -(Font) scaled to size 12.00128pt on input line 28. +(Font) scaled to size 12.00128pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusMath-Regular.otf(2)/m/n' will be -(Font) scaled to size 8.00085pt on input line 28. +(Font) scaled to size 8.00085pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusMath-Regular.otf(2)/m/n' will be -(Font) scaled to size 6.00064pt on input line 28. +(Font) scaled to size 6.00064pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusMath-Regular.otf(3)/m/n' will be -(Font) scaled to size 11.99872pt on input line 28. +(Font) scaled to size 11.99872pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusMath-Regular.otf(3)/m/n' will be -(Font) scaled to size 7.99915pt on input line 28. +(Font) scaled to size 7.99915pt on input line 38. LaTeX Font Info: Font shape `TU/LibertinusMath-Regular.otf(3)/m/n' will be -(Font) scaled to size 5.99936pt on input line 28. +(Font) scaled to size 5.99936pt on input line 38. File: ls9.png Graphic file (type png) -Package luatex.def Info: ls9.png used on input line 28. +Package luatex.def Info: ls9.png used on input line 38. (luatex.def) Requested size: 28.45274pt x 30.83527pt. Package epstopdf Info: Source file: (epstopdf) date: 2022-03-31 15:18:06 @@ -3387,17 +3382,19 @@ to.pdf> (epstopdf) size: 14274 bytes (epstopdf) Command: -(epstopdf) \includegraphics on input line 28. +(epstopdf) \includegraphics on input line 38. Package epstopdf Info: Output file is already uptodate. File: illustrations/tud_logo_cmyk-eps-converted-to.pdf Graphic file (type pdf) Package luatex.def Info: illustrations/tud_logo_cmyk-eps-converted-to.pdf used - on input line 28. + on input line 38. (luatex.def) Requested size: 131.13866pt x 21.33955pt. [8 -<./illustrations/chiara.png>]) (./topics/bin.tex - +]) (./topics/bin.tex +LaTeX Font Info: Font shape `TU/LibertinusSans(0)/b/n' will be +(Font) scaled to size 10.95pt on input line 28. + File: illustrations/bin.png Graphic file (type png) Package luatex.def Info: illustrations/bin.png used on input line 28. @@ -3422,10 +3419,11 @@ File: illustrations/tud_logo_cmyk-eps-converted-to.pdf Graphic file (type pdf) Package luatex.def Info: illustrations/tud_logo_cmyk-eps-converted-to.pdf used on input line 28. (luatex.def) Requested size: 131.13866pt x 21.33955pt. - [9 + +[9 <./illustrations/bin.png>]) (./topics/benedikt.tex - + File: illustrations/benedikt.png Graphic file (type png) Package luatex.def Info: illustrations/benedikt.png used on input line 28. @@ -3450,11 +3448,10 @@ File: illustrations/tud_logo_cmyk-eps-converted-to.pdf Graphic file (type pdf) Package luatex.def Info: illustrations/tud_logo_cmyk-eps-converted-to.pdf used on input line 28. (luatex.def) Requested size: 131.13866pt x 21.33955pt. - -[10 + [10 <./illustrations/benedikt.png>]) (./topics/simon.tex - + File: illustrations/simon.jpeg Graphic file (type jpg) Package luatex.def Info: illustrations/simon.jpeg used on input line 28. @@ -3564,7 +3561,8 @@ braces): > {german/babelname} => {ngerman} > {german/localnumeral} => {polyglossia@C@localnumeral} > {german/Localnumeral} => {polyglossia@C@localnumeral}. - (./slides.aux + +(./slides.aux Package polyglossia Info: Option: english variant=american (with additional pat terns). Package polyglossia Info: Option: english variant=american (with additional pat @@ -3587,23 +3585,23 @@ Package logreq Info: Writing requests to 'slides.run.xml'. ) Here is how much of LuaTeX's memory you used: - 66989 strings out of 477875 + 66976 strings out of 477875 125189,2848258 words of node,token memory allocated 4330 words of node memory still in use: 60 hlist, 9 vlist, 10 rule, 17 disc, 10 local_par, 124 glue, 26 kern, 26 pena lty, 3 margin_kern, 147 glyph, 131 attribute, 92 glue_spec, 131 attribute_list, 4 write, 46 pdf_colorstack, 1 pdf_setmatrix, 1 pdf_save, 1 pdf_restore nodes - avail lists: 1:11,2:643,3:239,4:375,5:204,6:54,7:2375,8:9,9:491,10:20,11:148, + avail lists: 1:11,2:643,3:239,4:375,5:214,6:54,7:2777,8:9,9:491,10:20,11:181, 12:1 - 84173 multiletter control sequences out of 65536+600000 - 108 fonts using 32689391 bytes + 84169 multiletter control sequences out of 65536+600000 + 109 fonts using 33087319 bytes 133i,20n,152p,998b,2327s stack positions out of 5000i,500n,10000p,200000b,80000s -Output written on slides.pdf (12 pages, 2857302 bytes). +Output written on slides.pdf (12 pages, 2282558 bytes). -PDF statistics: 139 PDF objects out of 1000 (max. 8388607) +PDF statistics: 137 PDF objects out of 1000 (max. 8388607) 100 compressed objects within 1 object stream 27 named destinations out of 1000 (max. 131072) 32 words of extra memory for PDF output out of 10000 (max. 100000000) diff --git a/slides.pdf b/slides.pdf index e66494f..53f5e08 100644 Binary files a/slides.pdf and b/slides.pdf differ diff --git a/topics/chiara.tex b/topics/chiara.tex index 0c3e639..d945c7f 100644 --- a/topics/chiara.tex +++ b/topics/chiara.tex @@ -1,26 +1,36 @@ \begin{frame} \frametitle{Topic 1: Shapley Values} -\Large \textbf{Shapley Values for Feature Selection: The Good, the Bad, and the Axioms} (Fryer, Strümke, Nguyen, et al., 2020)\\ - \LARGE \textbf{Chapter:} 9.2,9.5 and 9.6 \textbf{Supervisor:} Chiara Balestra (chiara.balestra@cs.uni-dortmund.de)\\ +%\Large \\ + \LARGE \textbf{Chapter:} 9.2,9.5 and 9.6 + 2/3 papers \\ + \textbf{Supervisor:} Chiara Balestra (chiara.balestra@cs.uni-dortmund.de)\\ %\begin{center} %\includegraphics[height=3cm]{illustrations/chiara.png} %\end{center} \begin{columns} - \begin{column}{.575\textwidth} - \begin{center} - \includegraphics[height=3cm]{illustrations/chiara.png} - \end{center} - \end{column} - \begin{column}{.375\textwidth} - \begin{itemize} - \item Use game theory to explain the output of a model - \item You could either focus on cs theory or on medical application - \end{itemize} + %\begin{column}{.3\textwidth} + % \begin{center} + % \includegraphics[height=3cm]{illustrations/chiara.png} + % \end{center} + %\end{column} + \begin{column}{0.475\textwidth} + Focus either on Computer Science + \begin{itemize} + \item \small\textbf{Shapley Values for Feature Selection: The Good, the Bad, and the Axioms} (Fryer et al. 2020) + \item \textbf{Explaining Models by Propagating Shapley Values of Local Components} (Chen et al. 2020) + \item \textbf{GraphSVX: Shapley Value Explanations for Graph Neural Networks} (Duval et al. 2021) + \end{itemize} + \end{column} + \begin{column}{0.475\textwidth} + Or on Medical Application + \begin{itemize} + \item \small\textbf{Identifying mortality factors from Machine Learning using Shapley values – a case of COVID19} (Smith et al. 2021) + \item \textbf{Explaining multivariate molecular diagnostic tests via Shapley values} (Roder et al. 2021) + \end{itemize} + \end{column} - \end{column} \end{columns} diff --git a/topics/chiara2.tex b/topics/chiara2.tex new file mode 100644 index 0000000..82675e4 --- /dev/null +++ b/topics/chiara2.tex @@ -0,0 +1,42 @@ +\begin{frame} +\frametitle{Topic 1: Shapley Values} + +%\Large \\ + \LARGE \textbf{Chapter:} 9.2,9.5 and 9.6 + 2/3 papers \\ + \textbf{Supervisor:} Chiara Balestra (chiara.balestra@cs.uni-dortmund.de)\\ + + %\begin{center} + %\includegraphics[height=3cm]{illustrations/chiara.png} + %\end{center} + + \begin{columns} + \begin{column}{.575\textwidth} + \begin{center} + \includegraphics[height=3cm]{illustrations/chiara.png} + \end{center} + \end{column} + \begin{column}{.375\textwidth} + \begin{itemize} + \item Use game theory to explain the output of a model + \begin{enumerate} + \item on cs theory + \begin{itemize} + \item \textbf{Shapley Values for Feature Selection: The Good, the Bad, and the Axioms} (Fryer et al. 2020) + \item \textbf{Explaining Models by Propagating Shapley Values of Local Components} (Chen et al. 2020) + \item \textbf{GraphSVX: Shapley Value Explanations for Graph Neural Networks} (Duval et al. 2021) + \end{itemize} + \item on medical application + \begin{itemize} + \item \textbf{Identifying mortality factors from Machine Learning using Shapley values – a case of COVID19} (Smith et al. 2021) + \item \textbf{Explaining multivariate molecular diagnostic tests via Shapley values} (Roder et al. 2021) + \end{itemize} + \end{enumerate} + + \end{itemize} + + \end{column} + \end{columns} + + + +\end{frame} diff --git a/topics/chiara_old.tex b/topics/chiara_old.tex new file mode 100644 index 0000000..0c3e639 --- /dev/null +++ b/topics/chiara_old.tex @@ -0,0 +1,28 @@ +\begin{frame} +\frametitle{Topic 1: Shapley Values} + +\Large \textbf{Shapley Values for Feature Selection: The Good, the Bad, and the Axioms} (Fryer, Strümke, Nguyen, et al., 2020)\\ + \LARGE \textbf{Chapter:} 9.2,9.5 and 9.6 \textbf{Supervisor:} Chiara Balestra (chiara.balestra@cs.uni-dortmund.de)\\ + + %\begin{center} + %\includegraphics[height=3cm]{illustrations/chiara.png} + %\end{center} + + \begin{columns} + \begin{column}{.575\textwidth} + \begin{center} + \includegraphics[height=3cm]{illustrations/chiara.png} + \end{center} + \end{column} + \begin{column}{.375\textwidth} + \begin{itemize} + \item Use game theory to explain the output of a model + \item You could either focus on cs theory or on medical application + \end{itemize} + + \end{column} + \end{columns} + + + +\end{frame}