diff --git a/Docker/Containerfile b/Docker/Containerfile
new file mode 100644
index 0000000..c3ea214
--- /dev/null
+++ b/Docker/Containerfile
@@ -0,0 +1,21 @@
+FROM ubuntu:rolling
+# Nix + systemd
+RUN apt update -y
+RUN apt install curl systemd zsh -y
+RUN curl --proto '=https' --tlsv1.2 -sSf -L https://install.determinate.systems/nix | sh -s -- install linux \
+  --extra-conf "sandbox = false" \
+  --no-start-daemon \
+  --no-confirm
+ENV PATH="${PATH}:/nix/var/nix/profiles/default/bin"
+RUN nix run nixpkgs#hello
+RUN systemctl enable nix-daemon.service
+CMD [ "/usr/lib/systemd/systemd" ]
+# SSH
+RUN apt update && apt install -y openssh-server
+RUN echo 'PermitRootLogin yes' >> /etc/ssh/sshd_config
+RUN echo 'PasswordAuthentication no' >> /etc/ssh/sshd_config
+RUN systemctl enable ssh
+# FRET packages
+COPY ./fret.list /tmp/apt.list
+RUN apt install -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" -y  $(grep -vE "^\s*#" /tmp/apt.list  | tr "\n" " ") 
+RUN rm /tmp/apt.list
diff --git a/Docker/README.md b/Docker/README.md
new file mode 100644
index 0000000..888548d
--- /dev/null
+++ b/Docker/README.md
@@ -0,0 +1,42 @@
+# Develop using a Container
+Use podamn oder docker to provide the environment.
+## Building the Container
+```sh
+docker build -t fretenv .
+```
+## Creating Container
+```sh
+docker create --name fretbuilder -v fretnixstore:/nix/store -v ../:/root/FRET localhost/fretenv:latest
+```
+The volume ``fretnixstore`` is optional. It is used to cache the packges installed using nix in case you need to re-create the container.
+Additionally, you can pass the following options to access the environment over ssh:
+```sh
+-p 2222:22 # 2222 is the ssh port of the container
+-v $SOMEWHERE:/root # somewhere with a .ssh directory
+```
+## Starting the Container
+```sh
+docker start fretbuilder
+```
+## Entering the Container
+```sh
+docker exec -it fretbuilder bash
+```
+## Using Nix
+```sh
+cd ~/FRET
+nix develop # or nix-shell
+```
+If you want to load the nix-shell automatically:
+```sh
+eval "$(direnv hook bash)"
+direnv allow
+```
+## Removing the Environment
+```sh
+docker stop fretbuilder
+docker container rm fretbuilder
+docker image rm fretenv
+```
+## Potential Issues
+If you run into a limit on threads when using podman, use ``podman create --pids-limit=8192 ...``
\ No newline at end of file
diff --git a/Docker/fret.list b/Docker/fret.list
new file mode 100644
index 0000000..403da8a
--- /dev/null
+++ b/Docker/fret.list
@@ -0,0 +1,20 @@
+# Essentials
+git
+vim
+zsh
+rsync
+wget
+tmux
+direnv
+htop
+gdb
+ffmpeg
+# FRET
+sqlite3
+build-essential
+python3-pandas
+python3-jinja2
+python3-matplotlib
+python3-numpy
+python3-reportbug
+python3-scipy
diff --git a/Docker/prep_sys.sh b/Docker/prep_sys.sh
new file mode 100644
index 0000000..e9a6d6c
--- /dev/null
+++ b/Docker/prep_sys.sh
@@ -0,0 +1 @@
+podman create --memory 350g --memory-swap 351g --name basepod -p 127.0.0.1:8224:22 -v basestore:/nix/store -v /fs/scratch/alwin/containers/home:/root:z -v  /fs/scratch/alwin/FRET:/root/FRET:z localhost/ubuntu-nix-basepod:latest
diff --git a/README.md b/README.md
index 22882a5..c05c2bb 100644
--- a/README.md
+++ b/README.md
@@ -5,8 +5,13 @@
 * FreeRTOS demos under `FreeRTOS/FreeRTOS/Demo/CORTEX_M3_MPS2_QEMU_GCC`
 * QEMU instrumentation under `qemu-libafl-bridge`
 ## HowTo
-### Development environment
-`nix develop` or `nix-shell`
+### Development environment using nix
+Use `nix develop` or `nix-shell` to enter a shell with all required tools.
+### Development environment using podman/docker
+If you don't have nix installed, you can use it though a container.
+See Docker/README.md.
+### Potential Issues
+If you encounter errors where a temporary directory is not found, use `mkdir -p $TMPDIR`
 ### Build FRET
 ```sh
 cd LibAFL/fuzzers/FRET
@@ -17,15 +22,13 @@ cargo build
 ```
 ### Build additional tools
 ```sh
-# Trace analysis tool
-cd state2gantt && cargo build && cd -
-# Benchmark evaluation tool
-cd LibAFL/fuzzers/FRET/benchmark/number_cruncher && cargo build && cd -
+LibAFL/fuzzers/FRET/tools/build.sh
 ```
 ### Build FreeRTOS Demos
 ```sh
 cd LibAFL/fuzzers/FRET/benchmark
 sh build_all_demos.sh
+# see LibAFL/fuzzers/FRET/benchmark/build
 ```
 ### Example usage
 * Build the demos and additional tools first
@@ -48,12 +51,20 @@ open $DUMP/show_job.html
 ### Perform canned benchmarks
 * Build the demos and additional tools first
 * Select a benchmark set in `LibAFL/fuzzers/FRET/benchmark/Snakefile`
+* Hardware Requirements:
+    - Recommendation: 512GiB of RAM with 64 physical cores
+    - About 8GB of RAM per Job on average are required to prevent OOMs
+    - The set used for the paper consists of ~270 Jobs, so you will need about five day to reproduce the results
 ```sh
 # $BENCHDIR
 cd LibAFL/fuzzers/FRET/benchmark
-# e.g.
-snakemake -c 128 set48 set64 set128
+# optional
+export BENCHDIR="eval_$(date -I)"
+# Reproduce the evals in the paper e.g.
+snakemake --cores 64 eval_bytes eval_int eval_full waters_multi
 # plot the resutls
 sh plot_all_benchmarks.sh
+# See images in $BENCHDIR
 sh plot_all_traces.sh
+# See HTML files in $BENCHDIR/timedump/*/ for traces of the worst cases
 ```
\ No newline at end of file
diff --git a/edge_compare/.gitignore b/edge_compare/.gitignore
deleted file mode 100644
index f153339..0000000
--- a/edge_compare/.gitignore
+++ /dev/null
@@ -1,6 +0,0 @@
-*.axf
-*.qcow2
-demo
-*.ron
-*.bsp
-target
diff --git a/edge_compare/Cargo.lock b/edge_compare/Cargo.lock
deleted file mode 100644
index c802628..0000000
--- a/edge_compare/Cargo.lock
+++ /dev/null
@@ -1,220 +0,0 @@
-# This file is automatically @generated by Cargo.
-# It is not intended for manual editing.
-version = 3
-
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-
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- "os_str_bytes",
- "strsim",
- "termcolor",
- "textwrap",
-]
-
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- "serde",
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-
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-dependencies = [
- "winapi",
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-
-[[package]]
-name = "winapi-x86_64-pc-windows-gnu"
-version = "0.4.0"
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diff --git a/edge_compare/Cargo.toml b/edge_compare/Cargo.toml
deleted file mode 100644
index 48cb0b8..0000000
--- a/edge_compare/Cargo.toml
+++ /dev/null
@@ -1,17 +0,0 @@
-[package]
-name = "edge_compare"
-version = "0.1.0"
-authors = [ "Alwin Berger <alwin.berger@tu-dortmund.de>" ]
-edition = "2021"
-
-[features]
-default = ["std"]
-std = []
-
-[profile.release]
-debug = true
-
-[dependencies]
-clap = { version = "3.1.1", features = ["default"] }
-serde = { version = "1.0", default-features = false, features = ["alloc"] } # serialization lib
-ron = "0.7" # write serialized data - including hashmaps
\ No newline at end of file
diff --git a/edge_compare/src/main.rs b/edge_compare/src/main.rs
deleted file mode 100644
index 4e42fcb..0000000
--- a/edge_compare/src/main.rs
+++ /dev/null
@@ -1,71 +0,0 @@
-use std::collections::HashMap;
-use std::path::PathBuf;
-use clap::Arg;
-use clap::App;
-use std::{env,fs};
-
-fn main() {
-    let res = match App::new("edge_compare")
-        .version("0.1.0")
-        .author("Alwin Berger")
-        .about("Compare Serialized Edge-Maps.")
-        .arg(
-            Arg::new("a")
-                .short('a')
-                .long("map-a")
-                .required(true)
-                .takes_value(true),
-        )
-        .arg(
-            Arg::new("b")
-                .short('b')
-                .long("map-b")
-                .required(true)
-                .takes_value(true),
-        )
-        .try_get_matches_from(env::args())
-    {
-        Ok(res) => res,
-        Err(err) => {
-            println!(
-                "Syntax: {}, --map-a <input> --map-b <input>\n{:?}",
-                env::current_exe()
-                    .unwrap_or_else(|_| "fuzzer".into())
-                    .to_string_lossy(),
-                err.info,
-            );
-            return;
-        }
-    };
-
-    let path_a = PathBuf::from(res.value_of("a").unwrap().to_string());
-    let path_b = PathBuf::from(res.value_of("b").unwrap().to_string());
-
-    let raw_a = fs::read(path_a).expect("Can not read dumped edges a");
-    let hmap_a : HashMap<(u64,u64),u64> = ron::from_str(&String::from_utf8_lossy(&raw_a)).expect("Can not parse HashMap");
-
-    let raw_b = fs::read(path_b).expect("Can not read dumped edges b");
-    let hmap_b : HashMap<(u64,u64),u64> = ron::from_str(&String::from_utf8_lossy(&raw_b)).expect("Can not parse HashMap");
-
-    let mut a_and_b = Vec::<((u64,u64),u64)>::new();
-    let mut a_and_b_differ = Vec::<((u64,u64),(u64,u64))>::new();
-    let mut a_sans_b = Vec::<((u64,u64),u64)>::new();
-
-    for i_a in hmap_a.clone() {
-        match hmap_b.get(&i_a.0) {
-            None => a_sans_b.push(i_a),
-            Some(x) => if i_a.1 == *x {
-                a_and_b.push(i_a);
-            } else {
-                a_and_b_differ.push((i_a.0,(i_a.1,*x)));
-            }
-        }
-    }
-    let b_sans_a : Vec<((u64,u64),u64)> = hmap_b.into_iter().filter(|x| !hmap_a.contains_key(&x.0) ).collect();
-
-    println!("a_sans_b: {:#?}\na_and_b_differ: {:#?}\nb_sans_a: {:#?}",&a_sans_b,&a_and_b_differ,&b_sans_a);
-    println!("Stats: a\\b: {} a&=b: {} a&!=b: {} b\\a: {} avb: {} jaccarde: {}",
-    a_sans_b.len(),a_and_b.len(),a_and_b_differ.len(),b_sans_a.len(),
-    a_and_b.len()+a_and_b_differ.len()+a_sans_b.len()+b_sans_a.len(),
-    (a_and_b.len()+a_and_b_differ.len())as f64/(a_and_b.len()+a_and_b_differ.len()+a_sans_b.len()+b_sans_a.len()) as f64);
-}
diff --git a/graph2viz/.gitignore b/graph2viz/.gitignore
deleted file mode 100644
index 230f5af..0000000
--- a/graph2viz/.gitignore
+++ /dev/null
@@ -1,4 +0,0 @@
-*.csv
-*.png
-*.pdf
-target
diff --git a/graph2viz/Cargo.lock b/graph2viz/Cargo.lock
deleted file mode 100644
index fcbc8ce..0000000
--- a/graph2viz/Cargo.lock
+++ /dev/null
@@ -1,2003 +0,0 @@
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-# It is not intended for manual editing.
-version = 3
-
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diff --git a/graph2viz/Cargo.toml b/graph2viz/Cargo.toml
deleted file mode 100644
index f6eccc6..0000000
--- a/graph2viz/Cargo.toml
+++ /dev/null
@@ -1,14 +0,0 @@
-[package]
-name = "graph2viz"
-version = "0.1.0"
-edition = "2021"
-
-# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
-
-[dependencies]
-fret = { path = "../LibAFL/fuzzers/FRET" }
-serde = { version = "1.0", default-features = false, features = ["alloc"] } # serialization lib
-hashbrown =  { version = "0.12", features = ["serde", "ahash-compile-time-rng"] } # A faster hashmap, nostd compatible
-petgraph = { version="0.6.0", features = ["serde-1"] }
-ron = "0.7" # write serialized data - including hashmaps
-rand = "0.5"
\ No newline at end of file
diff --git a/graph2viz/Makefile b/graph2viz/Makefile
deleted file mode 100644
index 936ce7b..0000000
--- a/graph2viz/Makefile
+++ /dev/null
@@ -1,4 +0,0 @@
-all(%):
-	target/debug/state2gantt $%_afl.ron > $%_afl.csv
-	target/debug/state2gantt $%_state.ron > $%_state.csv
-	target/debug/state2gantt $%_random.ron > $%_random.csv
\ No newline at end of file
diff --git a/graph2viz/src/main.rs b/graph2viz/src/main.rs
deleted file mode 100644
index ad1f808..0000000
--- a/graph2viz/src/main.rs
+++ /dev/null
@@ -1,71 +0,0 @@
-use std::path::PathBuf;
-use std::{env,fs};
-use fret::systemstate::graph::SysGraphFeedbackState;
-use petgraph::Direction::{Outgoing, Incoming};
-use petgraph::dot::{Dot, Config};
-
-fn main() {
-    let args : Vec<String> = env::args().collect();
-
-    let path_a = PathBuf::from(args[1].clone());
-    let raw_a = fs::read(path_a).expect("Can not read dumped traces b");
-    // let path_b = PathBuf::from(args[2].clone());
-
-    let feedbackstate : SysGraphFeedbackState = ron::from_str(&String::from_utf8_lossy(&raw_a)).expect("Can not parse HashMap");
-
-    let mut splits = 0;
-    let mut unites = 0;
-    let mut g = feedbackstate.graph;
-    dbg!(g.node_count());
-    let mut straight = 0;
-    let mut stub = 0;
-    let mut done = false;
-    while !done {
-        done = true;
-        for i in g.node_indices() {
-            let li = g.neighbors_directed(i, Incoming).count();
-            let lo = g.neighbors_directed(i, Outgoing).count();
-            if li == 1 && lo == 1 {
-                let prev = g.neighbors_directed(i, Incoming).into_iter().next().unwrap();
-                let next = g.neighbors_directed(i, Outgoing).into_iter().next().unwrap();
-                if prev != next {
-                    g.update_edge(prev, next, ());
-                    g.remove_node(i);
-                    straight+=1;
-                    done = false;
-                    break;
-                }
-            }
-        }
-    }
-    for i in g.node_indices() {
-        let li = g.neighbors_directed(i, Incoming).count();
-        if li>1 {
-            unites += 1;
-        }
-        let lo = g.neighbors_directed(i, Outgoing).count();
-        if lo>1 {
-            splits += 1;
-        }
-        if li == 0 || lo == 0 {
-            // g.remove_node(i);
-            stub += 1;
-        }
-    }
-    dbg!(splits);
-    dbg!(unites);
-    dbg!(straight);
-    dbg!(stub);
-
-    let newgraph = g.map(
-        |_, n| n.pretty_print(),
-        // |_, n| format!("{} {:?}",n.get_taskname(),n.get_input_counts().iter().min().unwrap_or(&0)),
-        |_, e| e,
-    );
-    // let tempg = format!("{:?}",Dot::with_config(&newgraph, &[Config::EdgeNoLabel]));
-    let f = format!("{:?}",Dot::with_config(&newgraph, &[Config::EdgeNoLabel]));
-    let f = f.replace("\\\\n", "\n");
-    let f = f.replace("\\\"", "");
-    println!("{}",f);
-
-}
diff --git a/input_crafter/.gitignore b/input_crafter/.gitignore
deleted file mode 100644
index eb5a316..0000000
--- a/input_crafter/.gitignore
+++ /dev/null
@@ -1 +0,0 @@
-target
diff --git a/input_serde/.gitignore b/input_serde/.gitignore
deleted file mode 100644
index 732450b..0000000
--- a/input_serde/.gitignore
+++ /dev/null
@@ -1,3 +0,0 @@
-target
-*.case
-*.edit
diff --git a/input_serde/Cargo.lock b/input_serde/Cargo.lock
deleted file mode 100644
index 44263c3..0000000
--- a/input_serde/Cargo.lock
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diff --git a/input_serde/Cargo.toml b/input_serde/Cargo.toml
deleted file mode 100644
index 41b767e..0000000
--- a/input_serde/Cargo.toml
+++ /dev/null
@@ -1,21 +0,0 @@
-[package]
-name = "input_serde"
-version = "0.1.0"
-edition = "2021"
-
-# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
-
-[dependencies]
-fret = { path = "../LibAFL/fuzzers/FRET" }
-libafl = { path = "../LibAFL/libafl" }
-serde = { version = "1.0", default-features = false, features = ["alloc"] } # serialization lib
-hashbrown =  { version = "0.14.0", features = ["serde"] } # A faster hashmap, nostd compatible
-# petgraph = { version="0.6.0", features = ["serde-1"] }
-ron = "0.7" # write serialized data - including hashmaps
-rand = "0.5"
-clap = "4.5.17"
-itertools = "0.13.0"
-either = { version = "1.13.0", features = ["serde"] }
-postcard = { version = "1.0.10", features = [
-  "alloc",
-], default-features = false } # no_std compatible serde serialization format
diff --git a/input_serde/src/main.rs b/input_serde/src/main.rs
deleted file mode 100644
index e6836af..0000000
--- a/input_serde/src/main.rs
+++ /dev/null
@@ -1,149 +0,0 @@
-use either::Either::{self, Left, Right};
-use hashbrown::HashMap;
-use rand::rngs::StdRng;
-use std::path::PathBuf;
-use std::{env,fs};
-use fret::systemstate::{ExecInterval, RTOSJob, target_os::SystemTraceData, target_os::freertos::FreeRTOSTraceMetadata, target_os::SystemState, target_os::TaskControlBlock, helpers::interrupt_times_to_input_bytes};
-use libafl::inputs::multi::MultipartInput;
-use libafl::inputs::{BytesInput, Input};
-use std::io::Write;
-use clap::Parser;
-use itertools::{assert_equal, join, Itertools};
-use rand::RngCore;
-use libafl::inputs::HasMutatorBytes;
-
-const MAX_NUM_INTERRUPT: usize = 128;
-const NUM_INTERRUPT_SOURCES: usize = 6; // Keep in sync with qemu-libafl-bridge/hw/timer/armv7m_systick.c:319 and  FreeRTOS/FreeRTOS/Demo/CORTEX_M3_MPS2_QEMU_GCC/init/startup.c:216
-pub const QEMU_ICOUNT_SHIFT: u32 = 5;
-pub const QEMU_ISNS_PER_SEC: u32 = u32::pow(10, 9) / u32::pow(2, QEMU_ICOUNT_SHIFT);
-pub const QEMU_ISNS_PER_USEC: f32 = QEMU_ISNS_PER_SEC as f32 / 1000000.0;
-
-#[derive(Parser)]
-struct Config {
-    /// Input Case
-    #[arg(short, long, value_name = "FILE")]
-    case: PathBuf,
-
-    /// Input format
-    #[arg(short, long, value_name = "FORMAT")]
-    input_format: Option<String>,
-
-    /// Output format
-    #[arg(short, long, value_name = "FORMAT", default_value = "edit")]
-    format: String,
-}
-
-/// Setup the interrupt inputs. Noop if interrupts are not fuzzed
-fn setup_interrupt_inputs(mut input : MultipartInput<BytesInput>) -> MultipartInput<BytesInput> {
-    for i in 0..MAX_NUM_INTERRUPT {
-        let name = format!("isr_{}_times",i);
-        if input.parts_by_name(&name).next().is_none() {
-            input.add_part(name, BytesInput::new([0; MAX_NUM_INTERRUPT*4].to_vec()));
-        }
-    }
-    input
-}
-
-fn unfold_input(input : &MultipartInput<BytesInput>) -> HashMap<String,Either<Vec<u8>,Vec<u32>>> {
-    let mut res = HashMap::new();
-    for (name, part) in input.iter() {
-        if name == "bytes" {
-            res.insert(name.to_string(),Left(part.bytes().to_vec()));
-        } else {
-            // let times = unsafe{std::mem::transmute::<&[u8], &[u32]>(&part.bytes()[0..4*(part.bytes().len()/4)])}.to_vec();
-            eprintln!("name {} len {}", name, part.bytes().len());
-            let mut times = part.bytes().chunks(4).filter(|x| x.len()==4).map(|x| u32::from_le_bytes(x.try_into().unwrap())).collect::<Vec<_>>();
-            times.sort_unstable();
-            res.insert(name.to_string(),Right(times));
-        }
-    }
-    res
-}
-
-fn fold_input(input : HashMap<String,Either<Vec<u8>,Vec<u32>>>) -> MultipartInput<BytesInput> {
-    let mut res = MultipartInput::new();
-    for (name, data) in input {
-        match data {
-            Left(x) => res.add_part(name, BytesInput::new(x)),
-            Right(x) => res.add_part(name, BytesInput::new(interrupt_times_to_input_bytes(&x))),
-        }
-    }
-    res
-}
-
-
-fn main() {
-    let conf = Config::parse();
-    let show_input = match conf.input_format {
-        Some(x) => {
-            match x.as_str() {
-                "case" => {
-                    eprintln!("Interpreting input file as multipart input");
-                    MultipartInput::from_file(conf.case.as_os_str()).unwrap()
-                },
-                "edit" => {
-                    let bytes = fs::read(conf.case).expect("Can not read input file");
-                    let input_str = String::from_utf8_lossy(&bytes);
-                    eprintln!("Interpreting input file as custom edit input");
-                    fold_input(ron::from_str::<HashMap<String,Either<Vec<u8>,Vec<u32>>>>(&input_str).expect("Failed to parse input"))
-                },
-                "ron" => {
-                    let bytes = fs::read(conf.case).expect("Can not read input file");
-                    let input_str = String::from_utf8_lossy(&bytes);
-                    eprintln!("Interpreting input file as raw ron input");
-                    ron::from_str::<MultipartInput<BytesInput>>(&input_str).expect("Failed to parse input")
-                },
-                "raw" => {
-                    let bytes = fs::read(conf.case).expect("Can not read input file");
-                    setup_interrupt_inputs(MultipartInput::from([("bytes",BytesInput::new(bytes))]))
-                },
-                x => panic!("Unknown input format: {}", x),
-            }
-        }
-        Option::None => match MultipartInput::from_file(conf.case.as_os_str()) {
-            Ok(x) => {
-                eprintln!("Interpreting input file as multipart input");
-                x
-            },
-            Err(_) => {
-                let bytes = fs::read(conf.case).expect("Can not read input file");
-                let input_str = String::from_utf8_lossy(&bytes);
-                match ron::from_str::<HashMap<String,Either<Vec<u8>,Vec<u32>>>>(&input_str) {
-                    Ok(x) => {
-                        eprintln!("Interpreting input file as custom edit input");
-                        fold_input(x)
-                    },
-                    Err(_) => {
-                        match ron::from_str::<MultipartInput<BytesInput>>(&input_str) {
-                            Ok(x) => {
-                                eprintln!("Interpreting input file as raw ron input");
-                                x
-                            },
-                            Err(_) => {
-                                eprintln!("Interpreting input file as raw input");
-                                setup_interrupt_inputs(MultipartInput::from([("bytes",BytesInput::new(bytes))]))
-                            }
-                        }
-                    }
-                }
-            }
-        }
-    };
-    // let uf = unfold_input(&show_input);
-    // println!("{:?}", show_input);
-    match conf.format.as_str() {
-        "edit" => {
-            let output = ron::to_string(&unfold_input(&show_input)).expect("Could not serialize input");
-            println!("{}", output);
-        },
-        "ron" => {
-            let output = ron::to_string(&show_input).expect("Could not serialize input");
-            println!("{}", output);
-        },
-        "case" => {
-            let output = postcard::to_allocvec(&show_input).expect("Could not serialize input");
-            std::io::stdout().write_all(&output).expect("Could not write output");
-        },
-        _ => panic!("Unknown format")
-    }
-}
diff --git a/one_time_setup.sh b/one_time_setup.sh
new file mode 100755
index 0000000..2ab615f
--- /dev/null
+++ b/one_time_setup.sh
@@ -0,0 +1,26 @@
+#!/usr/bin/env bash
+
+if  [[ -z "$INSIDE_DEVSHELL" ]]; then
+  echo "This script should be run inside a nix-shell. Run 'nix develop' or 'nix-shell' first."
+  exit 1
+fi
+
+# Always use the script's directory as the working directory
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+cd "$SCRIPT_DIR"
+
+# Ensure that all sources are up-to-date
+#git submodule update --init --recursive
+
+# The central directory for the benchmarks
+cd LibAFL/fuzzers/FRET/benchmark
+
+# one-time setup
+# build QEMU for the first time
+snakemake -c 1 rebuild_qemu
+# Build kelper tools to aid the analysis of the benchmarks
+snakemake -c 1 build_tools
+# Build the kernels for the benchmarks
+snakemake -c 1 build_kernels
+
+cd -
\ No newline at end of file
diff --git a/run_eval.sh b/run_eval.sh
new file mode 100755
index 0000000..d91b02a
--- /dev/null
+++ b/run_eval.sh
@@ -0,0 +1,31 @@
+#!/usr/bin/env bash
+
+# Configuration
+export CORES=64 # Number of physical cores
+export RUNTIME=86400 # 24 hours in seconds
+export TARGET_REPLICA_NUMBER=9
+export RANDOM_REPLICA_NUMBER=1
+export MULTIJOB_REPLICA_NUMBER=3
+
+if  [[ -z "$INSIDE_DEVSHELL" ]]; then
+  echo "This script should be run inside a nix-shell. Run 'nix develop' or 'nix-shell' first."
+  exit 1
+fi
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+cd "$SCRIPT_DIR"
+
+cd LibAFL/fuzzers/FRET/benchmark
+
+export BENCHDIR="eval_$(date -I)"
+# prepare all fuzzer configurations
+snakemake --keep-incomplete -n --cores $CORES all_bins
+# Run the eval examples from the paper
+snakemake --keep-incomplete -n --cores $CORES eval_bytes eval_int eval_full waters_multi
+# plot the resutls
+snakemake --keep-incomplete -n --cores $CORES plot_benchmarks
+# See images in $BENCHDIR
+snakemake --keep-incomplete -n --cores $CORES plot_traces
+# See HTML files in $BENCHDIR/timedump/*/ for traces of the worst cases
+
+cd -
\ No newline at end of file
diff --git a/state2gantt/.gitignore b/state2gantt/.gitignore
deleted file mode 100644
index 230f5af..0000000
--- a/state2gantt/.gitignore
+++ /dev/null
@@ -1,4 +0,0 @@
-*.csv
-*.png
-*.pdf
-target
diff --git a/state2gantt/Cargo.lock b/state2gantt/Cargo.lock
deleted file mode 100644
index bc86159..0000000
--- a/state2gantt/Cargo.lock
+++ /dev/null
@@ -1,1946 +0,0 @@
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-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "628bfdf232daa22b0d64fdb62b09fcc36bb01f05a3939e20ab73aaf9470d0463"
-
-[[package]]
-name = "windows_x86_64_gnullvm"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
-
-[[package]]
-name = "windows_x86_64_msvc"
-version = "0.42.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "447660ad36a13288b1db4d4248e857b510e8c3a225c822ba4fb748c0aafecffd"
-
-[[package]]
-name = "windows_x86_64_msvc"
-version = "0.52.6"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
-
-[[package]]
-name = "winsafe"
-version = "0.0.19"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d135d17ab770252ad95e9a872d365cf3090e3be864a34ab46f48555993efc904"
-
-[[package]]
-name = "xxhash-rust"
-version = "0.8.12"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6a5cbf750400958819fb6178eaa83bee5cd9c29a26a40cc241df8c70fdd46984"
-
-[[package]]
-name = "zerocopy"
-version = "0.7.35"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0"
-dependencies = [
- "zerocopy-derive",
-]
-
-[[package]]
-name = "zerocopy-derive"
-version = "0.7.35"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn",
-]
diff --git a/state2gantt/Cargo.toml b/state2gantt/Cargo.toml
deleted file mode 100644
index 93d44d1..0000000
--- a/state2gantt/Cargo.toml
+++ /dev/null
@@ -1,16 +0,0 @@
-[package]
-name = "state2gantt"
-version = "0.1.0"
-edition = "2021"
-
-# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
-
-[dependencies]
-fret = { path = "../LibAFL/fuzzers/FRET" }
-serde = { version = "1.0", default-features = false, features = ["alloc"] } # serialization lib
-hashbrown =  { version = "0.14.0", features = ["serde"] } # A faster hashmap, nostd compatible
-# petgraph = { version="0.6.0", features = ["serde-1"] }
-ron = "0.7" # write serialized data - including hashmaps
-rand = "0.5"
-clap = "4.5.17"
-itertools = "0.13.0"
diff --git a/state2gantt/Makefile b/state2gantt/Makefile
deleted file mode 100644
index 936ce7b..0000000
--- a/state2gantt/Makefile
+++ /dev/null
@@ -1,4 +0,0 @@
-all(%):
-	target/debug/state2gantt $%_afl.ron > $%_afl.csv
-	target/debug/state2gantt $%_state.ron > $%_state.csv
-	target/debug/state2gantt $%_random.ron > $%_random.csv
\ No newline at end of file
diff --git a/state2gantt/driver.sh b/state2gantt/driver.sh
deleted file mode 100755
index adeefa9..0000000
--- a/state2gantt/driver.sh
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/bin/sh
-ROOTDIR=~/code/work/FRETv3
-if [ -z "$1" ]; then exit 1; fi
-OFILE_A="$(dirname "$1")/$(basename -s .trace.ron "$1")_job.csv"
-OFILE_B="$(dirname "$1")/$(basename -s .trace.ron "$1")_instance.csv"
-OFILE_C="$(dirname "$1")/$(basename -s .trace.ron "$1")_abbs.csv"
-if [ -n "$2" ]; then
-EXTRA="-t $2"
-fi
-rm -f "$OFILE_A" "$OFILE_B"
-echo $ROOTDIR/state2gantt/target/debug/state2gantt -i $1 -a "$OFILE_A" -r "$OFILE_B" -p "$OFILE_C" $EXTRA
-$ROOTDIR/state2gantt/target/debug/state2gantt -i $1 -a "$OFILE_A" -r "$OFILE_B" -p "$OFILE_C" $EXTRA
-echo $ROOTDIR/state2gantt/plot_response.r "$OFILE_A" "$OFILE_B" html
-$ROOTDIR/state2gantt/plot_response.r "$OFILE_A" "$OFILE_B" html
diff --git a/state2gantt/gantt.R b/state2gantt/gantt.R
deleted file mode 100644
index ab7a655..0000000
--- a/state2gantt/gantt.R
+++ /dev/null
@@ -1,44 +0,0 @@
-args = commandArgs(trailingOnly=TRUE)
-if (length(args)==0) {
-  filename="~/code/FRET/state2gantt/trace.csv"
-} else {
-  filename=args[1]
-}
-trace <- read.csv(filename)
-
-task_ids = unique(trace[[3]]) # assume this has descending prio order
-prio_from_name <- function(t) {
-  1 + length(task_ids) - Position(function(y) y==t, task_ids)
-}
-
-trace[[3]]=sapply(trace[[3]], prio_from_name )
-
-width = 710
-height = (9/16) * width
-if (length(args)>0) { png(file=sprintf("%s.png",filename), width=width, height=height) }
-# prepare an empty plot
-plot(c(trace[[2]][1],trace[[2]][length(trace[[2]])]),
-     c(0,length(task_ids)),
-     col = "white", xlab = "", ylab = "")
-# draw all segments
-segments(x0 = trace$start,
-         y0 = trace$name,
-         x1 = trace$end,
-         y1 = trace$name,
-         lwd = 3)
-
-highlight_prio <- function(p,col) {
-  interest = trace[which(trace[[3]] == p),]
-  segments(x0 = interest$start,
-           y0 = interest$name,
-           x1 = interest$end,
-           y1 = interest$name,
-           lwd = 3,
-           col = col)
-}
-
-highlight_prio(1,"red")
-#highlight_prio(2,"green")
-
-if (length(args)>0) { dev.off() }
-
diff --git a/state2gantt/plot.r b/state2gantt/plot.r
deleted file mode 100755
index 5e2d2a6..0000000
--- a/state2gantt/plot.r
+++ /dev/null
@@ -1,87 +0,0 @@
-#!/usr/bin/env Rscript
-# Load necessary libraries
-library(ggplot2)
-library(readr)
-library(dplyr)
-library(plotly)
-
-QEMU_SHIFT<-5
-TIMESCALE<-1000000
-
-# Function to create a Gantt chart with dots on short segments
-create_gantt_chart <- function(csv_file, MIN_WIDTH, output_format = NULL) {
-  # Read the CSV file
-  df <- read_csv(csv_file)
-  
-  # Ensure start and end columns are treated as integers
-  df <- df %>%
-    mutate(start = (as.integer(start) * 2**QEMU_SHIFT)/TIMESCALE,
-           end = (as.integer(end) * 2**QEMU_SHIFT)/TIMESCALE)
-  
-  # Calculate the segment width
-  df <- df %>%
-    mutate(width = end - start)
-  
-  # Sort the DataFrame by 'prio' column in descending order
-  df <- df %>%
-    arrange(prio)
-
-  df$label <- paste(
-    "Start:", df$start,
-    "<br>",
-    "Prio:", df$prio,
-    "<br>",
-    "Name:", df$name,
-    "<br>",
-    "State:", df$state_id,
-    "<br>",
-    "State:", df$state,
-    "<br>",
-    "End:", df$end
-  )
-  
-  # Create the Gantt chart with ggplot2
-  p <- ggplot(df, aes(x = start, xend = end, y = reorder(name, prio), yend = name, text = label)) +
-    geom_segment(aes(color = factor(prio)), size = 6) +
-    labs(title = "Gantt Chart", x = "Time Step", y = "Task", color = "Priority") +
-    theme_minimal()
-  
-  # Add dots on segments shorter than MIN_WIDTH
-  p <- p + geom_point(data = df %>% filter(width < MIN_WIDTH), 
-                      aes(x = start, y = name), 
-                      color = "red", size = 1)
-  
-  # Convert the ggplot object to a plotly object for interactivity
-  p_interactive <- ggplotly(p)
-  
-  # Handle output format
-  if (!is.null(output_format)) {
-    output_file <- sub("\\.csv$", paste0(".", output_format), csv_file)
-    if (output_format == "html") {
-      htmlwidgets::saveWidget(p_interactive, output_file)
-    } else if (output_format == "png") {
-      ggsave(output_file, plot = p, device = "png")
-    } else {
-      stop("Invalid output format. Use 'html' or 'png'.")
-    }
-  } else {
-    # Print the interactive Gantt chart
-    print(p_interactive)
-  }
-}
-
-# Main execution
-args <- commandArgs(trailingOnly = TRUE)
-if (length(args) < 1 || length(args) > 2) {
-  stop("Usage: Rscript script.R <csv_file> [output_format]")
-} else {
-  csv_file <- args[1]
-  if (length(args) == 2) {
-    output_format <- args[2]
-  } else {
-    output_format <- NULL
-  }
-}
-
-MIN_WIDTH <- 500 # You can set your desired minimum width here
-create_gantt_chart(csv_file, MIN_WIDTH, output_format)
diff --git a/state2gantt/plot_gantt.py b/state2gantt/plot_gantt.py
deleted file mode 100644
index c97a3d5..0000000
--- a/state2gantt/plot_gantt.py
+++ /dev/null
@@ -1,29 +0,0 @@
-import plotly.figure_factory as ff
-import plotly.express as px
-import pandas as pd
-import sys
-
-def create_gantt_chart(csv_file):
-    # Read the CSV file
-    df = pd.read_csv(csv_file)
-    df.sort_values(by='prio', inplace=True, ascending=False)
-
-    # Prepare the data for the Gantt chart
-    gantt_data = [
-        dict(Task=row['name'], Start=row['start'], Finish=row['end'], Priority=row['prio'])
-        for _, row in df.iterrows()
-    ]
-
-    # Create the Gantt chart
-    fig = ff.create_gantt(gantt_data, group_tasks=True)
-    
-    # Show the Gantt chart
-    fig.write_html("plot.html")
-
-if __name__ == "__main__":
-    if len(sys.argv) != 2:
-        print("Usage: python script.py <csv_file>")
-        sys.exit(1)
-    
-    csv_file = sys.argv[1]
-    create_gantt_chart(csv_file)
\ No newline at end of file
diff --git a/state2gantt/plot_response.r b/state2gantt/plot_response.r
deleted file mode 100755
index 42d7be6..0000000
--- a/state2gantt/plot_response.r
+++ /dev/null
@@ -1,132 +0,0 @@
-#!/usr/bin/env Rscript
-# Load necessary libraries
-#install.packages(c(ggplot2,readr,dplyr,plotly))
-library(ggplot2)
-library(readr)
-library(dplyr)
-library(plotly)
-
-QEMU_SHIFT<-5
-TIMESCALE<-1000000
-
-# Function to create a Gantt chart with dots on short segments
-create_gantt_chart <- function(csv_file_a, csv_file_b, MIN_WIDTH, output_format = NULL, startpoint, endpoint) {
-  # Read the CSV file
-  df <- read_csv(csv_file_a)
-  # df_b <- read_csv(csv_file_b)
-  df_b <- read_csv(csv_file_b, col_types = cols(.default = "d", name = col_character()))
-  # df <- df %>% bind_rows(df_b)
-
-  # Cut out everything outside the range
-  df <- df %>%
-    filter(end >= startpoint & start <= endpoint) %>% rowwise %>% mutate(end = min(end, endpoint), start = max(start, startpoint))
-
-  df_b <- df_b %>%
-    filter(end >= startpoint & start <= endpoint) %>% rowwise %>% mutate(end = min(end, endpoint), start = max(start, startpoint))
-
-  # Add a placeholder for all tasks that don't have job instances in the range
-  s <- min(df$start)
-  placeholder <- df_b %>% mutate(start = s, end = s)
-  df <- df %>% bind_rows(placeholder)
-  
-  
-  # Ensure start and end columns are treated as integers
-  df <- df %>%
-    mutate(start = (as.integer(start) * 2**QEMU_SHIFT)/TIMESCALE,
-           end = (as.integer(end) * 2**QEMU_SHIFT)/TIMESCALE)
-
-  df_b <- df_b %>%
-    mutate(start = (as.integer(start) * 2**QEMU_SHIFT)/TIMESCALE,
-           end = (as.integer(end) * 2**QEMU_SHIFT)/TIMESCALE)
-  
-  # Calculate the segment width
-  df <- df %>%
-    mutate(width = end - start)
-  
-  # Sort the DataFrame by 'prio' column in descending order
-  df <- df %>%
-    arrange(prio)
-
-  # Add labels to segments
-  df$label <- paste(
-    "Start:", df$start,
-    "<br>",
-    "Prio:", df$prio,
-    "<br>",
-    "Name:", df$name,
-    "<br>",
-    "Id:", df$state_id,
-    "<br>",
-    "State:", df$state,
-    "<br>",
-    "ABB:", df$abb,
-    "<br>",
-    "End:", df$end
-  )
-  df_b$label <- paste(
-    "Start:", df_b$start,
-    "<br>",
-    "End:", df_b$end
-  )
-  
-  # Create the Gantt chart with ggplot2
-  p <- ggplot(df, aes(x = start, xend = end, y = reorder(name, prio), yend = name, text = label)) +
-    geom_segment(aes(color = factor(prio)), size = 6) +
-    labs(title = "Gantt Chart", x = "Time Step", y = "Task", color = "Priority") +
-    theme_minimal()
-
-  # Plot Ranges
-  p <- p + geom_segment(data = df_b, aes(color = factor(prio)), size = 1)
-
-  p <- p + geom_point(data = df_b, 
-                      aes(x = end, y = name), 
-                      color = "blue", size = 2)
-
-  # Add dots on segments shorter than MIN_WIDTH
-  p <- p + geom_point(data = df %>% filter(width < MIN_WIDTH & width > 0), 
-                      aes(x = start, y = name), 
-                      color = "red", size = 1)
-  
-  # Handle output format
-  if (!is.null(output_format)) {
-    output_file <- sub("\\.csv$", paste0(".", output_format), csv_file_a)
-    if (output_format == "html") {
-      # Convert the ggplot object to a plotly object for interactivity
-      p_interactive <- ggplotly(p)
-      htmlwidgets::saveWidget(p_interactive, output_file)
-    } else if (output_format == "png") {
-      ggsave(output_file, plot = p, device = "png")
-    } else {
-      stop("Invalid output format. Use 'html' or 'png'.")
-    }
-  } else {
-    # Convert the ggplot object to a plotly object for interactivity
-    p_interactive <- ggplotly(p)
-    # Print the interactive Gantt chart
-    print(p_interactive)
-  }
-}
-
-# Main execution
-args <- commandArgs(trailingOnly = TRUE)
-if (length(args) < 2 || length(args) > 5) {
-  stop("Usage: Rscript script.R <csv_file> <csv_file> [output_format] [<strt> <end>]")
-} else {
-  csv_file_a <- args[1]
-  csv_file_b <- args[2]
-  if (length(args) >= 3) {
-    output_format <- args[3]
-  } else {
-    output_format <- NULL
-  }
-  if (length(args) >= 5) {
-    start <- as.integer(args[4])
-    end <- as.integer(args[5])
-  } else {
-    start <- 0
-    end <- Inf
-  }
-}
-
-MIN_WIDTH <- 500 # You can set your desired minimum width here
-create_gantt_chart(csv_file_a, csv_file_b, MIN_WIDTH, output_format, start, end)
diff --git a/state2gantt/src/main.rs b/state2gantt/src/main.rs
deleted file mode 100644
index e020fb9..0000000
--- a/state2gantt/src/main.rs
+++ /dev/null
@@ -1,141 +0,0 @@
-use hashbrown::HashMap;
-use std::path::PathBuf;
-use std::{env,fs};
-use fret::systemstate::{ExecInterval, RTOSJob, target_os::SystemTraceData, target_os::freertos::FreeRTOSTraceMetadata, target_os::SystemState, target_os::TaskControlBlock};
-use std::io::Write;
-use clap::Parser;
-use itertools::Itertools;
-
-#[derive(Parser)]
-struct Config {
-    /// Input Trace
-    #[arg(short, long, value_name = "FILE")]
-    input_trace: PathBuf,
-
-    /// Output for activations
-    #[arg(short, long, value_name = "FILE")]
-    activation: Option<PathBuf>,
-
-    /// Output for Release-Response intervals
-    #[arg(short, long, value_name = "FILE")]
-    response: Option<PathBuf>,
-
-    /// Output abbs by task
-    #[arg(short, long, value_name = "FILE")]
-    per_task: Option<PathBuf>,
-
-    /// Focussed Task
-    #[arg(short, long, value_name = "TASK")]
-    task: Option<String>,
-
-    /// Translate times to microseconds
-    #[arg(short, long)]
-    micros: bool,
-}
-
-fn main() {
-    // let args : Vec<String> = env::args().collect();
-    let mut conf = Config::parse();
-
-    let input_path = conf.input_trace;
-    let raw_input = fs::read(input_path).expect("Can not read dumped traces");
-
-    let activation_path = conf.activation;
-    let instance_path = conf.response;
-    let abb_path = conf.per_task;
-
-    /* Write all execution intervals */
-    let mut activation_file = activation_path.map(|x| std::fs::OpenOptions::new()
-        .read(false)
-        .write(true)
-        .create(true)
-        .append(false)
-        .open(x).expect("Could not create file"));
-
-    let mut level_per_task : HashMap<String, u32> = HashMap::new();
-
-
-    // Store priority per task
-    let trace : FreeRTOSTraceMetadata = ron::from_str(&String::from_utf8_lossy(&raw_input)).expect("Can not parse HashMap");
-    // task_name -> (abb_addr -> (interval_count, exec_count, exec_time, woet))
-    let mut abb_profile : HashMap<String, HashMap<u32, (usize, usize, u64, u64)>> = trace.select_abb_profile(conf.task.clone());
-    for s in trace.intervals() {
-        if s.level == 0 {
-            let t = trace.states_map()[&s.start_state].current_task();
-            level_per_task.insert(t.task_name().clone(),t.base_priority);
-        }
-    }
-
-    // Range of longest selected job
-    let limits = conf.task.as_ref().map(|task| trace.worst_jobs_per_task_by_response_time().get(task).map(|x| x.release..x.response)).flatten();
-    if let Some(limits) = &limits {
-        println!("Limits: {} - {}",limits.start,limits.end);
-    }
-
-    let mut intervals = trace.intervals().clone();
-    activation_file.as_mut().map(|x| writeln!(x,"start,end,prio,name,state_id,state,abb").expect("Could not write to file"));
-    for s in intervals.iter_mut() {
-        if let Some(l) = &limits {
-            if s.start_tick > l.end || s.end_tick < l.start {
-                continue;
-            }
-            s.start_tick = s.start_tick.max(l.start);
-            s.end_tick = s.end_tick.min(l.end);
-        }
-        let start_tick = if conf.micros {s.start_tick as f32 / fret::time::clock::QEMU_ISNS_PER_USEC} else {s.start_tick as f32};
-        let end_tick = if conf.micros {s.end_tick as f32 / fret::time::clock::QEMU_ISNS_PER_USEC} else {s.end_tick as f32};
-        let state = &trace.states_map()[&s.start_state];
-        if s.level == 0 {
-            activation_file.as_mut().map(|x| writeln!(x,"{},{},{},{},{:X},{},{}",start_tick,end_tick,trace.states_map()[&s.start_state].current_task().priority,trace.states_map()[&s.start_state].current_task().task_name, state.get_hash()>>48, state, s.abb.as_ref().map(|x| x.get_start()).unwrap_or(u32::MAX) ).expect("Could not write to file"));
-        } else {
-            activation_file.as_mut().map(|x| writeln!(x,"{},{},-{},{},{:X},{},{}",start_tick,end_tick,s.level,s.start_capture.1, state.get_hash()>>48, state, s.abb.as_ref().map(|x| x.get_start()).unwrap_or(u32::MAX)).expect("Could not write to file"));
-        }
-    }
-
-    let mut jobs = trace.jobs().clone();
-    /* Write all job instances from release to response */
-    let instance_file = instance_path.map(|x| std::fs::OpenOptions::new()
-        .read(false)
-        .write(true)
-        .create(true)
-        .append(false)
-        .open(x).expect("Could not create file"));
-
-    if let Some(mut file) = instance_file {
-        writeln!(file,"start,end,prio,name").expect("Could not write to file");
-        for s in jobs.iter_mut() {
-            if limits.as_ref().map(|x| !x.contains(&s.release) && !x.contains(&s.response) ).unwrap_or(false) {
-                continue;
-            }
-            if let Some(l) = &limits {
-                if s.release > l.end || s.response < l.start {
-                    continue;
-                }
-                s.release = s.release.max(l.start);
-                s.response = s.response.min(l.end);
-            }
-            writeln!(file,"{},{},{},{}",s.release,s.response,level_per_task[&s.name],s.name).expect("Could not write to file");
-        }
-    }
-
-    /* Write all abbs per task */
-    let abb_file = abb_path.map(|x| std::fs::OpenOptions::new()
-        .read(false)
-        .write(true)
-        .create(true)
-        .append(false)
-        .open(x).expect("Could not create file"));
-
-    if let Some(mut file) = abb_file {
-        conf.micros = true;
-        if abb_profile.is_empty() {
-            return;
-        }
-        writeln!(file,"name,addr,active,finish,micros,woet").expect("Could not write to file");
-        for (name, rest) in abb_profile.iter_mut().sorted_by_key(|x| x.0) {
-            rest.iter().sorted_by_key(|x| x.0).for_each(|(addr, (active, finish, time, woet))| {
-                writeln!(file,"{},{},{},{},{},{}",name,addr,active,finish,if conf.micros {*time as f64 / fret::time::clock::QEMU_ISNS_PER_USEC as f64} else {*time as f64}, if conf.micros {*woet as f64 / fret::time::clock::QEMU_ISNS_PER_USEC as f64} else {*woet as f64}).expect("Could not write to file");
-            });
-        }
-    }
-}